Basic Information | |
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Taxon OID | 3300027977 Open in IMG/M |
Scaffold ID | Ga0247834_1020145 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 4905 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (26.32%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016774 | Metagenome / Metatranscriptome | 244 | Y |
F036564 | Metagenome / Metatranscriptome | 169 | N |
F044916 | Metagenome / Metatranscriptome | 153 | Y |
F064403 | Metagenome / Metatranscriptome | 128 | N |
F096610 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247834_10201451 | F016774 | N/A | MPPKKPKIEFLSEHIASLNHWRDQLLALEKSYYTKDPEKQRTCRNMINKYLDDVLTHNKNIKEKPKK |
Ga0247834_102014513 | F044916 | N/A | MGKRKAEKSRIEKGLEKEEKTFSVMAKKIIDAIKDEKELRIFAKTSLEILYKDNPNLFSDHAKLKLKKK |
Ga0247834_102014514 | F064403 | GGAGG | MTKGIIRHIEPREMILTKLKQSYLKEHSVTLVDRILGYLNNLTDFQLCELYSEKFDTNSKYIAEQYEFNF |
Ga0247834_102014515 | F036564 | GGAG | MKLGRISLDLSYIVDMDNDDMVAHATEALYEDLMQGVKYGDLANWIRISEDKDAKEDMISEFLLEEQND |
Ga0247834_10201454 | F096610 | N/A | MANRPKTYFVKLTDNTNGTITISEAKILDKVNQHARHWRSFDKRKLTSKLRSSDLVTS |
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