Scaffold Ga0209702_10040084

Overview

Basic Information

• Taxon OID: 3300027976
• Scaffold ID: Ga0209702_10040084
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2909
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006056	Metagenome	382	N
F009733	Metagenome	313	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_100400844	F009733	AGGAG	VSEIDQELHVDTVEVEPVKKKPTSSKHPKVADETERARAIVRAKLKG
Ga0209702_100400847	F006056	N/A	STTNPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTDILDATGLDYLNAGDPDITLYAILEADAQPATALDAIGRIAQGTGATYYDDPTGRIIFEDYGNRGSTTFAGIWANQTGTWADAEGTWADAPLFPPSFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDLSVTQTDSASITQYGRREYRLDTGIKTITDATTRAAGIMTAQANGLWNLGQISVLVDQLNPTDTQQLLDLVSGALVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWSEVGAGAQWFEIITQSDLVRL