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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027976 Open in IMG/M |
| Scaffold ID | Ga0209702_10033807 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3400 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Fryxell, Antarctica | |||||||
| Coordinates | Lat. (o) | -77.605 | Long. (o) | 163.163 | Alt. (m) | Depth (m) | 18 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006056 | Metagenome | 382 | N |
| F009733 | Metagenome | 313 | N |
| F010818 | Metagenome / Metatranscriptome | 298 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209702_100338071 | F006056 | N/A | RGRHPGARMTLQITLAGSVIDLDLFEFNVTIAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVARFTGAISDLNVSFISTTNPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVETILDAANETFVNGGDPDITLYAILEADAQVTTALDALGRVASWTGATYYDDPLGRIIFEDYGNRGQTTFAGIWSNQIGTWADAQGDWASYPITIGSLPLNAGGIIFAPTWSKTLSPLINDVTVEYGPDLIQNQTDTGSITQYGRREYRLQTEIKNAGDAINRAASIITAQANGLWNLGQLSILMSELDADQTTKVLNLVSGAIVNVIGLPASGPYTQFNGVLEGWTDSYNNGQHILTLSISDPRFSYQMLEFGEVTDTLTWSNIDPSARWYEIITNSDLIGA |
| Ga0209702_100338074 | F009733 | AGGAG | VSEIDQELHVDTVEPEPVKKKPTSSKHPKVATETERARAIVRAKLKG |
| Ga0209702_100338075 | F010818 | AGG | MDFRDVVGLIATSLAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGDSLADVSSKVDRIIEKLGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |