NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10000701

Scaffold Ga0209702_10000701


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10000701 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69847
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055453Metagenome138Y
F071209Metagenome / Metatranscriptome122Y
F078676Metagenome / Metatranscriptome116Y
F097281Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209702_1000070115F078676AGGAMTKQIHGAASSMQNLTADLQYYVCYASSPGAFTDPNPNPPASQEIIRLMNIQVTGNPLDESQKNFEVLLMSIGLRAMPVVLSDPYAVIELADLTQELSGEGFVWKFAVERGVQFFNFTPYGTPGPVGLLVDDLNGVIIPSGVRVTTVSGSPTGWAKNTVFSRMQSV
Ga0209702_1000070162F055453N/AMKLKDILLESPTDVVARFYIEASAASDKFYNPEDVKYKEKTSAYYKEHFDSWFKEGKVPVFEKPTDLVQPEYTNEPKQGKLQSPGFRGLQYALAAAGLPYNHKLQAYEPNAAGIVATPTMDAAQNNNGQ
Ga0209702_1000070166F071209GGAMDKHKYIPMNNLVKDKKTEWTFTHLNMEYIEIAKHGIVMWCIENLEGRWTMLGGNKFAFEDGEDATLFKIQFGFGVS
Ga0209702_1000070175F097281N/AMTKQKTTGEQPVNMKEKNASHTFRVTIRDQPHFYKIVNWLNTNVGKGEDKWTMEGRVLRILKQGKTVSPNIYIYRVDFEESNALYLSLL

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