NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209391_10065806

Scaffold Ga0209391_10065806


Overview

Basic Information
Taxon OID3300027975 Open in IMG/M
Scaffold IDGa0209391_10065806 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1672
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023895Metagenome / Metatranscriptome208Y
F027557Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209391_100658062F023895AGGMSEPKDTPMRRGPPGTDGLSDTAVRRLKFGAASDGWEAYANWLDRVRQQPGRASRQAVISKALYSVSSYKNWADKARGAFDDTK
Ga0209391_100658063F027557N/AMERLLKWLDDIDDFLAVTRLQAGPVLVTITLLAVFLVVLGVVLVLGPPELHAAP

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