Scaffold Ga0209299_1133182

Overview

Basic Information

• Taxon OID: 3300027974
• Scaffold ID: Ga0209299_1133182
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 950
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015463	Metagenome / Metatranscriptome	254	Y
F082074	Metagenome	113	Y
F093166	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209299_11331821	F082074	N/A	MKAYIMLIMLLQLDPMDGLPYTTALQQSPMTEYSTLEECESAAESKRTEMLKSSRQYPDLAIVNILITCVDSSEADFDPDNIAI
Ga0209299_11331822	F015463	GGA	MQFNTWLKWSACVITLAGAVLTSLRIDPQNIYLLNAGAILYFIWGYRIREWNLIVINAGFILVYAWGIYLS
Ga0209299_11331824	F093166	N/A	RMKIRTKGKMTQHEILASTIWDLKRDYDRMDEKDVAYDLGYIMGLCNSLGRTKLGDMVLNKFEQYAF