Scaffold Ga0209298_10015474

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10015474
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3924
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010463	Metagenome	303	N
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1001547410	F033350	GGAGG	MSVDVDVPRVKWSMLEWKTMEEKPKNDEKVLMDIGGEVAVGRFVDGSFVSRSWGHSENDVRLWASWPVAPKW
Ga0209298_1001547411	F023833	AGGA	MKSHSDQLQDIINDAMRKAASLERERCAELVQKLADGTEDQVIQDILNEVVVALRRLSDE
Ga0209298_100154742	F024265	N/A	MNEAYTTPEAKANGILSDRYPGKELEKLYSTTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED
Ga0209298_100154746	F010463	N/A	MNNPQELVVAATIHRVKMCEDRIREFEQMVTTLTAQMAHNRAELASKGLANLVMGTTTPLDIPKELVPTYGKYRARGNRKYDVVKKRWAIWKAQYNSGLSLTNIAKAWGCHHTTILNAVNRNFTPRKATGRGKK