NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10010419

Scaffold Ga0209298_10010419


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10010419 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4973
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002036Metagenome / Metatranscriptome600Y
F002044Metagenome / Metatranscriptome599Y
F007522Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1001041912F002036N/ATMQNRSGTEAPDTIYNIASLIANSAFGYLYEDNAGNIGYADADHRQTYLLANGYVDLDANHALGSGLSTITRSGDIRNDIIINYGSNFGLEKTASSASSIALYGYKGESIQSTIHSAVDAQAVADRYIAQRAFPLPVFQSITFPLTNPEIDNSDRDNLLGIFMGQPLNIQNLPTQISDGEFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPIGEAWNTLSATLTWEYATIVS
Ga0209298_100104194F007522GGAMTLKEAGLLWVATMMGMLSLYWVYENAKTVSYWRGRHDGWTMHRRMIENKIDADNN
Ga0209298_100104196F002044N/AMANTRKPSKRKKINRRVVRHSPEPLSKLDQHYTALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDND

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