Scaffold Ga0209298_10004784

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10004784
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7822
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F002099	Metagenome / Metatranscriptome	593	Y
F012435	Metagenome / Metatranscriptome	280	Y
F021293	Metagenome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000478412	F021293	GAG	MIQMHKWYPFVYPKEYDVRAIAVEKRAERLEFEQRQAEKAQKVRDVVEAYDLELYNKRAEQHSVELEMFKDRKQFDKFA
Ga0209298_1000478413	F002099	N/A	MRWLVAFALILALQTAGKDLCSVREFYSIAWSIHNPTERYEKMAEWLTKHQNLCKSTDFVVIWNNLSEWGGTSDSHALRGLVISGYKEALEREKK
Ga0209298_1000478414	F012435	N/A	MTEIDLVEYGVLRQKVESMEAKINKMETQLETLIELANKGRGGFWMGMVFVSALSTILGYFSHQWSK
Ga0209298_100047848	F000166	AGG	MSNIPTSDDAEFFAQSVQKWQKILNLADWRIEKGMKPAKAAMASVEFNDNARLATYRLGDFGAEKITKESLDKTALHELLHVLLHDLMVTATDPKSSDEDIEMQEHRVINLLENLLSKDCNGIE