Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10002773 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10002773 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10795
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10795

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F044916	Metagenome / Metatranscriptome	153	Y
F048123	Metagenome / Metatranscriptome	148	Y
F078229	Metagenome / Metatranscriptome	116	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100027731	F044916	N/A	MGRKKPDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKISLEILYKDNPNLF
Ga0209298_1000277311	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYGFSLTNKTNISKIAERMYNFRPF
Ga0209298_1000277312	F104482	N/A	MKKQKNKMTSEEFEKAMKAEGRLISKVCYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0209298_1000277314	F032536	GGA	MSKRQSLEELMQDFRFHKNPILNWAFGQSNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYYSLANRHHLIIDDKIVPYVPKEDDFVFNTTLGCHIDKTSGLEISLNQKEYEYVLDEIIFALQMIVNEEDSEVGLEELYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
Ga0209298_1000277316	F024040	GAGG	MNIYVTGHNWLAKVDIDSQKIDKSNWYNEACTRAVESVLDQEEKEGVDLKIQDYEDFGLGVILLTWDEKNSKNEDDHIVLLTSNILANAGRWEEYRFVKDYEEKAKEEGL
Ga0209298_100027739	F078229	N/A	MSKIKYTYYIEQDKDKDGNLVQGWSIYKAPLVKTIKVKTFKKLKDADAFLDNYENN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10002773

Overview

Ecosystem & Geography

Associated Families

Sequences