Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10002076 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10002076 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12627
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (21.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12627

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (21.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023350	Metagenome / Metatranscriptome	210	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F045753	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000207614	F023350	N/A	LTLEKYIEGHYKHFKELAYNIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYILEDFTYRGLSKETGIPMPFLYRTIDNIKQKIRANVIRKK
Ga0209298_1000207618	F045753	N/A	MKSFYCPRVSYCFTKDDMNTLNERIKAIALNYHEEETGWFDVDENQHLVFIDDQDNMYTIYLRGRFWRADEPNFDLEFVRLEKDGISFHFDIEMFDDKV
Ga0209298_100020762	F028175	N/A	MAITIDDQPYEYTPIGQRLMLVASSTNVANAGFRFVFDFGSFQVNVQPNASDRGILDLAPIFREQLQHDASAADASMNEEYTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSNGYKPDPNTRYALNGITKYLLSERTTDTHKWSEAAARGLSSNWVYIPTRLADFGQLYSISNNGLLGDNIATDLFVSTYDNTNTLIEAVNYGLSADLGTISRLGAYPQNLIGGGLDFTNVKYYTIQAGESILPPIYTAASRVYCFYIVSDDCRFDNVRLGWTNTCGGVDYFNFTKKSELSYNYDRKQYQKVIGAYSDDTFSFNTYDRGATDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVYIINDDGTMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0209298_100020763	F036240	AGAAG	MANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAIASGTLEKSLAYRLKIKGKEIDISVYAKGKAGQYFLFREKGVNGTQRSQGAPYSFKRGSGSKPAKGQMSPMQQAIYDWMSIKGIRLRDKSSGKFKKSSEELKQTVAKLIMFKVRRDGIKGWNAFEYAFDNIWDEYESKIVEAYGKDFSATLENELKDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10002076

Overview

Ecosystem & Geography

Associated Families

Sequences