Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10001748 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10001748 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14019
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (69.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14019

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (69.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007164	Metagenome / Metatranscriptome	356	Y
F008938	Metagenome	325	Y
F010463	Metagenome	303	N
F024265	Metagenome	206	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000174813	F007164	AGGA	MSEKQVGMELQRTVKQLEKAKETAIEQMGVAIGLAADAGDILISARTEGLDMDKVLEIGQINGEQGRRLERVAKARPALQAPTPGGLKQLALWTGLLPDPIETSNPKAEAAWHSYIIKARQWLARKTPAQWTPAQRQQFLEEARPIVEAYKEAGGEL
Ga0209298_1000174816	F008938	GGA	MIRQKELCDKWGLTKGAISQLVKAGMPLTSVADAERWKIANQKNPSRARPILSASANLSETSENLDAESIKLENPLGRLHRARRAEVVAYSLVQRAANEKNPVAMRAAVQGWGEAKKRVAEAEMEHARWEEMNRVTLRMDEVQEWITKWHGGIRALLDAMPSSLAARANPSDPECAKQAIQDGVNQIFITIQKGEGAFK
Ga0209298_100017486	F010463	N/A	MITQPQELVLAATIHRVKMCEDKIKEFEQMVSTLTSQMAQNRTELASKGLASLVMGTTTPLDIPKELVPTYGKHRARCNRSHSIVKKRWELWKAQHDSGLSIQEIAKAWGCHHTSVLNAKNRNFTPRKATGRGKK
Ga0209298_100017488	F024265	N/A	MNETYTTAEARANSILTDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKCE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10001748

Overview

Ecosystem & Geography

Associated Families

Sequences