Scaffold Ga0209298_10000399

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000399
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28730
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (4.55%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004366	Metagenome / Metatranscriptome	441	Y
F010620	Metagenome	301	Y
F013186	Metagenome / Metatranscriptome	273	N
F017298	Metagenome / Metatranscriptome	241	Y
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y
F038670	Metagenome	165	N
F061550	Metagenome	131	Y
F074877	Metagenome	119	N
F075858	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000039913	F010620	N/A	MKKLIVFLSVLTLFNCSSERKAQYHYKKALKHGLKLIQDSDTIRITTIDSIPIIVNDTIVWEKVVTTKDSVIFFKNVYLPKTRFQTRIEYRYKTKVLKQDVLKYKYIYKTEKKQKSKTNWILLVWGFIIGVLLSFITKLLLKLYLPF
Ga0209298_1000039922	F038670	N/A	MITILGKEIPNQLDELTIDQFEVITELSNNKELDAVDRHLQIFGSLGLAESEFYDVDVADFIEYTNQFNTIPEIEYPTISQIELAGYNYTAELKMTVRDTKLIEKIAISKPKGYISDILAIFFKRDDLTPAEHYAEAHLKLKAKLIKELKANIAIPYLLFITNKLIKQVDKVEDVLAEEV
Ga0209298_1000039927	F004366	N/A	MNSLQAITNHIIAFYTAHKQVFKVGTDFKEQLYNFATQDEKYPLVYIVPSGVIPTENTTEFTFDIYCYDIIQKDRTNIITILSDTQQILNDLYIYYMDSNDYSFDVVSVPVFTPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI
Ga0209298_100003993	F061550	N/A	MELELLKSRVILHKTLLKLKASREEIEEKNEHRKDLINSMLETENELSEVLTTFLILEKQAREFSQSAYRLERLNLELKCEIKQLNNELKTNNF
Ga0209298_1000039931	F037224	N/A	MHSDILHKIQVVQAFIHHKTGKQVRIVFNRPERMQQHLALLDQAYMIAMNEFKNTNTK
Ga0209298_1000039934	F019139	N/A	MKTKNEYLGKYITTYNGNFETSFTVTEETAKDHKYYTSIGLGYLFEEATPKVKYTGVENTKKDKDA
Ga0209298_1000039936	F013186	N/A	MKRLLDNYISRAYPEVRAYTAYFLSKMGLYLDADTVINNSYLHVLTINDNTSDEDKVKAYLLNTIKYQILWSTSKSHKDDRITSIIDNSPDRIDGDELNDKIKEDRNYSFQKGLLEIYRLSLKDNVQRIVFEAYIDKGYITSRSLATYFGITHTSAYYLIKDLKQNLNELQYRYESESIY
Ga0209298_1000039938	F075858	N/A	MLINDHSLREYLLEALKTRTRNQIVKEIQGRGEKFHQYNIDRFLQGKDVSLETAKKLDKYIYRIKIYDCNLF
Ga0209298_100003997	F017298	N/A	METTENTFTQTTFSLKRKMQWWREQSVEGDKGGSFNLNLYLDYLSEQEFNEIPNSNETL
Ga0209298_100003999	F074877	N/A	MTTEQMTATILLYSIELRDEYNQMAGAFGHTDPATQRLQTKYVTLLILIEKLGLDENY