NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209298_10000245

Scaffold Ga0209298_10000245


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000245 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35362
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (16.39%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010833Metagenome298Y
F011074Metagenome295N
F019816Metagenome227Y
F025481Metagenome201Y
F033030Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000024514F010833N/AMKYKQLLQLVGNLNAVIGGTETKTQKKLVQIYNKVKPYHEAYNTEVESLRLDAAQTDDKDCLLLDDKGNYKYSKDGIKKLTKDIEALNDKEFDFVIINIVNPKGLEDFTFLEDWTTGIEFNKQEEEEL
Ga0209298_1000024525F025481N/AMFQFERYGNILIDGDRSTTNPYDPALLPKNYDYEDDDYTFTRWVENNAEQELLKTEQYED
Ga0209298_1000024528F019816N/AMRDLLPFERQMLLAEVYHYAWYNEEAYADLLTFIEKYQTILDKPVFLTHINNNDTETTNLEPLAFGQNLDTDPGINEVQ
Ga0209298_1000024529F033030N/AMTEKKWSAGAWKKTTAKGEVINFTIENVKYSMWVNSYKTEDKQPDYKIYVNDFKPKEDTEGLPF
Ga0209298_1000024532F011074AGGAGMQSFSGERVRNLNSTIFKQNLVYLMQLVGINNPGEVKLAILEDWVRTEYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLKIIDYSYQEYKVLENRTFDRVFNPLSVFTKLNTSGIKVWTKEDGAIAKKKLMEIITFKASKMDFATAKQYRDEWTEQWLKNQARAVAVALFFEDQIKIGKVSFS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.