NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10000116

Scaffold Ga0209298_10000116


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000116 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45624
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (54.55%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003748Metagenome / Metatranscriptome470Y
F004664Metagenome / Metatranscriptome428N
F005388Metagenome / Metatranscriptome402N
F005740Metagenome / Metatranscriptome391N
F007856Metagenome / Metatranscriptome343Y
F012040Metagenome / Metatranscriptome284N
F012111Metagenome283N
F026825Metagenome / Metatranscriptome196N
F032582Metagenome179N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100001161F007856AGGAGMKKQIVACDPGVGGGFAINTPDGIILMAMPESLPDIHQILIGFKMAESQFWVEKVPKFVCKLTPAASVATLHENYGIVQGLAYS
Ga0209298_1000011612F003748N/AMFKVNRQDGAAQFINTEGDFVVTVSKVEESLDNKGREVCKVTFKTDDGSSTSDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGKKGSFGEFVKSMVGLKLIIVARFEEYVDQAGEKKKIIRVKNMKAVAPVAAEDNLPY
Ga0209298_1000011631F005388N/AMACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWSAITLASGVPTGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAVADSSFTQTETIPAGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDQRFADMGSGEGAQLLKRIGANRVIKNFRHVPNLFPPRFSYAGGKYTLIQPFTSANGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLGWMPTNYMGEWQWVTGAYKLSVDCVDPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0209298_1000011637F026825GAGMSDSHFFRYIYVGVGGPILGLLGNSIFSEPNLKIASIALGALAALLTCFVKSIELYRKIKNNK
Ga0209298_1000011642F012040N/AMINWMRGLTKENPKNLLELPDVNIADWITNGQQAELSLIMRNPVLRMALRIVAESIPIPMPSHGSKESDIVFAAGVTAGYAHCLENLRKLAVVEATKELEATFDNKN
Ga0209298_1000011644F032582N/AMRVDFDNTPTFIVSKPESEKEKRCIRYMKSFEIDAVPMYGFRSHNCGISTDYYHNFEKEKAKVKTIVAGLSHFSVWSAIKWMVEAKVTNHRTFLIVEDDVEFIDKNWKAKANDNLEFLPNDWHVIYLGSCCADPIEDHAYISSNLYKLVRGMCTHAYLVNYEGACKLLETNQKVWCPIDIQIAIDSMPRMNFYGILPRLATQENTNLYP
Ga0209298_1000011649F004664N/AMNKRTGYKILNEHMVIPGGWQYRVPETGIEIAGGSWPQLHEFIKNHYNANAIQIPNNLDDLIVEYACRNGADCTYDEVELSKPAGRKSLELGDVIKFSLSLLHGLTIGGGKVGQEEANRRARICAGCRFNRKPLGCTGCNARVLKEAVKTFSQHGSTPVDEQLQSCEFCGCFIRSMVWFPIETLHKFTDTTQNENLPDHCWKKRPCTAI
Ga0209298_1000011652F012111N/AMSERAPKRYTDGSVTFAGGIDSGVMPSEVDKNQVAFAVNASFRQGFVSPRPGFIQKNLVICDSITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSDPLIFNGVGIRRANVDEIKCGRMMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDIWKNLNYPIQTISLLTNGALGSRSVITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGSDQSIQFWEISKAERSDKSVASDKKKIEWLIQTRGYNFEIPFGLKRLDSGDIFIDELDGEDSLDGQTNYVDRKVSFNVKYRPDQYPGWIDWANWSECATTDQCGNLCPTLKNFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTIRGFCRIKSVRVHAYDVQESAVGECRTFQGCKTLEACDVNPFTYTSE
Ga0209298_1000011654F005740GAGMKLIVQDIQSTIARVIGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGVWIDGEKLTLALPYVQSTKKFTSLTGVIRETTNTVSRLYEYNATTLLELDVAVYDPDETLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNAATANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF

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