Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10000116 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10000116 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45624
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (54.55%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

45624

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (54.55%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003748	Metagenome / Metatranscriptome	470	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F007856	Metagenome / Metatranscriptome	343	Y
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F026825	Metagenome / Metatranscriptome	196	N
F032582	Metagenome	179	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100001161	F007856	AGGAG	MKKQIVACDPGVGGGFAINTPDGIILMAMPESLPDIHQILIGFKMAESQFWVEKVPKFVCKLTPAASVATLHENYGIVQGLAYS
Ga0209298_1000011612	F003748	N/A	MFKVNRQDGAAQFINTEGDFVVTVSKVEESLDNKGREVCKVTFKTDDGSSTSDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGKKGSFGEFVKSMVGLKLIIVARFEEYVDQAGEKKKIIRVKNMKAVAPVAAEDNLPY
Ga0209298_1000011631	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWSAITLASGVPTGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAVADSSFTQTETIPAGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDQRFADMGSGEGAQLLKRIGANRVIKNFRHVPNLFPPRFSYAGGKYTLIQPFTSANGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLGWMPTNYMGEWQWVTGAYKLSVDCVDPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0209298_1000011637	F026825	GAG	MSDSHFFRYIYVGVGGPILGLLGNSIFSEPNLKIASIALGALAALLTCFVKSIELYRKIKNNK
Ga0209298_1000011642	F012040	N/A	MINWMRGLTKENPKNLLELPDVNIADWITNGQQAELSLIMRNPVLRMALRIVAESIPIPMPSHGSKESDIVFAAGVTAGYAHCLENLRKLAVVEATKELEATFDNKN
Ga0209298_1000011644	F032582	N/A	MRVDFDNTPTFIVSKPESEKEKRCIRYMKSFEIDAVPMYGFRSHNCGISTDYYHNFEKEKAKVKTIVAGLSHFSVWSAIKWMVEAKVTNHRTFLIVEDDVEFIDKNWKAKANDNLEFLPNDWHVIYLGSCCADPIEDHAYISSNLYKLVRGMCTHAYLVNYEGACKLLETNQKVWCPIDIQIAIDSMPRMNFYGILPRLATQENTNLYP
Ga0209298_1000011649	F004664	N/A	MNKRTGYKILNEHMVIPGGWQYRVPETGIEIAGGSWPQLHEFIKNHYNANAIQIPNNLDDLIVEYACRNGADCTYDEVELSKPAGRKSLELGDVIKFSLSLLHGLTIGGGKVGQEEANRRARICAGCRFNRKPLGCTGCNARVLKEAVKTFSQHGSTPVDEQLQSCEFCGCFIRSMVWFPIETLHKFTDTTQNENLPDHCWKKRPCTAI
Ga0209298_1000011652	F012111	N/A	MSERAPKRYTDGSVTFAGGIDSGVMPSEVDKNQVAFAVNASFRQGFVSPRPGFIQKNLVICDSITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSDPLIFNGVGIRRANVDEIKCGRMMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDIWKNLNYPIQTISLLTNGALGSRSVITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGSDQSIQFWEISKAERSDKSVASDKKKIEWLIQTRGYNFEIPFGLKRLDSGDIFIDELDGEDSLDGQTNYVDRKVSFNVKYRPDQYPGWIDWANWSECATTDQCGNLCPTLKNFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTIRGFCRIKSVRVHAYDVQESAVGECRTFQGCKTLEACDVNPFTYTSE
Ga0209298_1000011654	F005740	GAG	MKLIVQDIQSTIARVIGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGVWIDGEKLTLALPYVQSTKKFTSLTGVIRETTNTVSRLYEYNATTLLELDVAVYDPDETLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNAATANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10000116

Overview

Ecosystem & Geography

Associated Families

Sequences