Scaffold Ga0209298_10000058

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000058
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66080
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (77.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008071	Metagenome	339	Y
F056556	Metagenome	137	N
F068578	Metagenome / Metatranscriptome	124	N
F068581	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000005811	F008071	AGAAGG	MTAIEYIEASGVPESRWPNFREWFSWYERNNLVGVVKEGQEVVGVAVARAVDGTQDVKHYVHMPDGQDAYIDLTVTSIDGTSTARSRLAMKRLLSILWDELGPRRSLIFSRNGTRKTYDYMKFMKKALV
Ga0209298_1000005824	F068578	GGA	MSTESIMEAIDSLGTAVRELQEGLPVKDHTEPTIEDVATYASSVIRKIMNRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNTSSPDGSGETCIDHLERALVRAVFTLYKAKEGKIR
Ga0209298_1000005827	F056556	AGGAGG	MKRQIVTVSCQLPEWFEKHSLPRMEESSKRWDASLVVIKPEKPIGLLAKMSLVDAVKNADRTLFVDSDVLISRECVNPFETFPQGHFYACADAPHGDQLHWGRANEMILSQAMLGSVRWTQGYFNTGVMVCDRQHAGAWDNFVYAPFAFPEQTFTNYRARMLGYSIRFLSWEWNAMEINTPKDKKQSDAFMPHAAGIYGDDRAKWIEEMDKVLP
Ga0209298_100000588	F068581	N/A	MKLDLSIQEVNTILACLGRAPYEAVFELVDKIRSQAKEQSEAK