Scaffold Ga0209401_1011119

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1011119
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4973
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F004696	Metagenome	427	Y
F008359	Metagenome / Metatranscriptome	334	Y
F032282	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10111191	F003691	N/A	MYMNSRMTNEFNQYTEVAYNTSRNERPIYKNFSASKMSQCVKPQSMVEFTDFMGRVHKVSVRNNTELKKQMKFFGMLKRESSTIKQIIASYPIKLGKVEKRFLAECKRELKSVLKLTNKQMEIVLG
Ga0209401_101111910	F004696	N/A	MDFAINKLKDDEVVLMKKIKSLKDGKPKWKCNEELVELRSAIKLLERYNEMTSQQMENEDEYLMELFEEHPPKAKA
Ga0209401_101111911	F032282	N/A	MNSNTIVNTLHSIDIERYNSIEEERNKILNDENFIQWCKEMNIGIRVEVKDYRSNELMNQYTNYPKWVSRQF
Ga0209401_10111192	F008359	N/A	MKSKVNQKSLYEIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFVDSYTDTKMTIGIVKNIMNEIKLK