Scaffold Ga0209401_1006040

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1006040
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7235
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F036564	Metagenome / Metatranscriptome	169	N
F048121	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10060401	F048121	N/A	MNTTNTQYTWQVKATTGQLVVAPKSYPTLRGAKIA
Ga0209401_100604016	F036564	GGAG	MKLGRISVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLGNWIRVSEDKNATEDMIPEFLLDKEND
Ga0209401_100604018	F027756	GAG	MKLKDLIDRKILYLNFPINRYAVQEGKVTEISPSEKCIKINADWHLISNIRIIELFSEKERPTLGFN
Ga0209401_100604025	F048123	N/A	MKPRYDFTKGKLISYDGEIIEFAGSAIVDKYPDQVQEIMDLFDFKKGEYLVTDESSIGDFEKQNMNPKKLQKFKKKYGFSLTNSSNISKIAERMYNFRPF