NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1006040

Scaffold Ga0209401_1006040


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1006040 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7235
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (30.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F036564Metagenome / Metatranscriptome169N
F048121Metagenome / Metatranscriptome148N
F048123Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10060401F048121N/AMNTTNTQYTWQVKATTGQLVVAPKSYPTLRGAKIA
Ga0209401_100604016F036564GGAGMKLGRISVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLGNWIRVSEDKNATEDMIPEFLLDKEND
Ga0209401_100604018F027756GAGMKLKDLIDRKILYLNFPINRYAVQEGKVTEISPSEKCIKINADWHLISNIRIIELFSEKERPTLGFN
Ga0209401_100604025F048123N/AMKPRYDFTKGKLISYDGEIIEFAGSAIVDKYPDQVQEIMDLFDFKKGEYLVTDESSIGDFEKQNMNPKKLQKFKKKYGFSLTNSSNISKIAERMYNFRPF

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