Scaffold Ga0209401_1004369

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1004369
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8752
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010315	Metagenome	305	Y
F012661	Metagenome	278	Y
F065560	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100436915	F012661	GAGG	MESKPKKRTFRPEGKKGQVVFYNDQEKEALAHIGDGSIAEGARISIQWAAHFWRVGLRPDFDLNHVGICLFVDDDLADDL
Ga0209401_100436917	F010315	AGG	MDNLFEEFQGADVERLADCLIAIRKAGLRVDKYTHAGVNQSSGNVWVWSEDWAGCVACSIGFDVFWVYSCPECGHEYEYENYSDLENYAETCASNTMDGKCDNCAEVTA
Ga0209401_10043697	F065560	AGGA	MIDSAEDEAFNEIERQSLWRKRAVESALKLNPYRDQVIEEVAQAILKMEGFGKDTLHSFAIYIRGLK