Scaffold Ga0209401_1001289

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1001289
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16712
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F011482	Metagenome / Metatranscriptome	290	Y
F057363	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100128918	F006261	GAGG	MAVLSSGYTTTEPILIANAEIWSFTAVESPTIQVTQLRVQQPLNSSIVESYGVFKPLGASKTIVVATSIYGIDGSYEFTTQGETEWDALYPVLTYQGILHVHDPLGRQKYVRFVDRTWTEVGDIANLIRNAKVNYYEVEAP
Ga0209401_100128921	F057363	AGGAG	MDKKLQAMLASYGRSFLSAITAAFMITGGDILALDGDSLKAILAAGLAAVLPVAIRAANPKDPAFGKIAEGVFQVLVKKTTVLKTPKKK
Ga0209401_100128923	F011482	GAGG	MAEEIQPTLGEVMRRLDDLTMEVKQMNLNVGQTYLRKDVYDSDSERFSQAMEHITDRLEKMESRSEWVIRTVGALFITTVVGASMYIGQSIGI
Ga0209401_10012896	F008607	AGGAG	MADAIYSKVAEFMTDSVVFTAKTAVDKYNKPTFSGDTTVVGRLIYDTVKSKDVQGIEVVDVGRFITKGPATTIAVSHKMVIGADTFTVNGVHNISDENGAHHTVIRFGR