Basic Information | |
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Taxon OID | 3300027971 Open in IMG/M |
Scaffold ID | Ga0209401_1000320 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32925 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (68.52%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005502 | Metagenome / Metatranscriptome | 398 | N |
F006891 | Metagenome | 362 | Y |
F007747 | Metagenome / Metatranscriptome | 345 | Y |
F016963 | Metagenome | 243 | N |
F026867 | Metagenome | 196 | Y |
F031026 | Metagenome | 183 | N |
F042872 | Metagenome | 157 | Y |
F048158 | Metagenome / Metatranscriptome | 148 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209401_100032010 | F016963 | GGAGG | VIEILPEQSTHEQLLNRVRSLARELAEAKSALAAAEGRENNLIERIRAGL |
Ga0209401_100032018 | F042872 | N/A | MKLPIIINQIESGNCTVGSNPTPSEAYHYNDLSRNGNTAVITGPKKAHYQQLNLNSRGGYDLTPDAFVYHPNPAVCRMWAQQHEASK |
Ga0209401_100032020 | F026867 | N/A | MSSVRLNDSAMKLRQENRALSLRQLGAAYGLGYVRIKQMQSLPGFPLIAGKVIPSDFDQWRLMQTGLSSLHRGDRLRSVVGKVHALESKSGSRVSWRQIANTLKDEAWLHELPARNENSD |
Ga0209401_100032027 | F031026 | GGA | MRGGLNALLLISSLALCSCATTSQTQDGPPPSPDTISYFIYEWDKAERTNKPCPQAYRDLFAQSLKALSDCLAEVERERARK |
Ga0209401_100032029 | F006891 | N/A | MSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTAWELIKRRFSL |
Ga0209401_10003204 | F007747 | AGGA | MKDLGKITFGKACPAPKQVLVDVTYDGKTAKALHAFGLKQLKKDKEAVIEYVIKKALEGLAKK |
Ga0209401_100032054 | F048158 | AGTAG | MARPVNHDVKRAMAATGKSRATVYLQRKKAESQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKILAARDNALIPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL |
Ga0209401_10003209 | F005502 | AGG | MRALCNVVLTFLAFFGFPVTQASNVMIDLRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK |
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