NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1000320

Scaffold Ga0209401_1000320


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1000320 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32925
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (68.52%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F006891Metagenome362Y
F007747Metagenome / Metatranscriptome345Y
F016963Metagenome243N
F026867Metagenome196Y
F031026Metagenome183N
F042872Metagenome157Y
F048158Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100032010F016963GGAGGVIEILPEQSTHEQLLNRVRSLARELAEAKSALAAAEGRENNLIERIRAGL
Ga0209401_100032018F042872N/AMKLPIIINQIESGNCTVGSNPTPSEAYHYNDLSRNGNTAVITGPKKAHYQQLNLNSRGGYDLTPDAFVYHPNPAVCRMWAQQHEASK
Ga0209401_100032020F026867N/AMSSVRLNDSAMKLRQENRALSLRQLGAAYGLGYVRIKQMQSLPGFPLIAGKVIPSDFDQWRLMQTGLSSLHRGDRLRSVVGKVHALESKSGSRVSWRQIANTLKDEAWLHELPARNENSD
Ga0209401_100032027F031026GGAMRGGLNALLLISSLALCSCATTSQTQDGPPPSPDTISYFIYEWDKAERTNKPCPQAYRDLFAQSLKALSDCLAEVERERARK
Ga0209401_100032029F006891N/AMSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTAWELIKRRFSL
Ga0209401_10003204F007747AGGAMKDLGKITFGKACPAPKQVLVDVTYDGKTAKALHAFGLKQLKKDKEAVIEYVIKKALEGLAKK
Ga0209401_100032054F048158AGTAGMARPVNHDVKRAMAATGKSRATVYLQRKKAESQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKILAARDNALIPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL
Ga0209401_10003209F005502AGGMRALCNVVLTFLAFFGFPVTQASNVMIDLRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK

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