NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1000305

Scaffold Ga0209401_1000305


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1000305 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33846
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (79.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008072Metagenome / Metatranscriptome339Y
F009735Metagenome / Metatranscriptome313Y
F016782Metagenome / Metatranscriptome244Y
F096877Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100030518F009735N/AMTMMTGIVEAISTKDVNTKFGNKPTYSLKVNGTWVKCGFKNPNAGAGDEVEFDGNTGTYGLETKAVNVLRKGAGTPAPAATSNTTTAVPRTTGSGYAAKVFPIPALHGDRAIVRQNALARATDIYIAARGGKPWELDASNLDFVISLARKFEAYTAGDLDMAEAIAENEEVQE
Ga0209401_100030525F016782GGAGVETTSSPLYAAATESLVSDASATSTFEKMIQVAYTHSTVDTFTKELKDTEKLIKKDFEISSMPGPWRSAKSVIHTAMKLSISLVDDNGSYCGKTYLQNKIKETKPDKEEVTNQQYIDKVLKLLMEIPGHLDAKTIHSEVKKMLFA
Ga0209401_100030539F008072N/AMRRKTSHDKRYKKSHWTQNQKLQAVSTYLMLGNMAETAVVTGIPLATLKIWKVTDWFKEYCLQLQSEDVQQMDSNLKRVITKALKATEDRLDLGDAQFDQKTGEIIRIPVKAHVALKISTELMTKQQKLYENPVREEVERTIDERLLKLSEEFARFATMKKNTIDVEARVIEQT
Ga0209401_10003058F096877GGAGGMKITIEFDDLIEAKQAIHAHDVWTAMLDINQAIRSHTKHDVSEKQTIANIQEILSDVSQLLYS
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Institute for Fundamental Biomedical Research
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