NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1006949

Scaffold Ga0209191_1006949


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1006949 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6233
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F018716Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_100694910F018716GGCGGMLFQKKEIIVLTTSENQVAVLWDNQNGFWWNETCALVLEVFGLPGNRYESHPEEDCMTFTFKNKKDADLCRILLSERL
Ga0209191_100694916F002977GAGMTAQTPAEGIMKTNDWGDSRVYRVACNCGDETHNHNVWVEADDCDVQVTIYTTGKTNYWSKTRWYHIWTLLTKGYIDTESSVHLSKQQALNYAETLKSAIDDLETFRNARQNKEERATIKKMANEQDCV

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