NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1005043

Scaffold Ga0209191_1005043


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1005043 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7546
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005529Metagenome / Metatranscriptome397Y
F008073Metagenome339Y
F042328Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_100504314F008073N/AMREIILKHLQKMEFVCGLKQFKEYKESDAIELVECIHTLFKSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSGWINQYYAHHQSQIVQEVQAMKRVDREPTEEEIAQWIEIGKQIFRDNYQSAKESGFCKDLAEWGGNWFNKMQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEITVGAKSKNKIWKLFILESIKENRNLDKLI
Ga0209191_10050432F042328N/AMEAKQKVRLGNGKKRSDSWLTAAICLSDCHAHAYTYNGKTYINVSINIYDKPNDFGKDVAINLNDYKKEENNNPQVNKVPTATYQDEDYDLPF
Ga0209191_10050437F005529N/AMARGLPKSKLDYSLEIRYKESSGKWSAWMNKGKGSFQSIEIVQRQIRLLAASYYGREKEIRFEWNGWLCDFAGLPTGEVISLK

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