NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1000869

Scaffold Ga0209191_1000869


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1000869 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21341
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (79.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044442Metagenome / Metatranscriptome154Y
F048265Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_100086922F044442AGGAMLKFANLSLSQKRFVVAVLESNKQYKKDPQITLKECAAIYYTIRDQRTGAKGEKIGYPNWLFNKNKIERGVYQLPIPTDTELSAYAKELAEKNTPKVAKAKAKVAKLAKAKTVKVKAPAKTAIAKEDTMEVSRLQKIVDESAEFDDDTEDFNAILRENGITV
Ga0209191_10008694F048265AGGAMTITTLKNTNQETVIHFTSSLAESGTITIANLTADTQARNSDTPIVNIVKYSIVGELGSKVSILRNSKIVLVCAPENAPYAEFNAWGIPVTNDNTSNIVITNGAAKDVSGFLVLRKIAGWSTEVENATYGAYDDPTRVGASTTLSGSPDKV

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