Scaffold Ga0209191_1000346

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000346
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36833
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (10.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004474	Metagenome / Metatranscriptome	436	Y
F012672	Metagenome / Metatranscriptome	278	N
F038677	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100034635	F004474	N/A	MNNYLLSVENLKKLGLIHSNTDTKILAVAIRRSQDMHIQASIGTNLFKSLLQRVEDNDWTPETLLLMNDYITPCLVAFVDYRCALLLNEKLTNKSVGRVQDENIQPNTDGETSALRDQLRKDAYFYKERLIGFLRDDNGVEYPEYVTTLEGQCNESVRRDRNGYTPINFVI
Ga0209191_10003465	F038677	N/A	MANDFDFLDTFGISTSEAQQPQNVYEKFLLDVGNKVTADLRDYIKTNVSNTGGLASSVVYVPNGALTFEIQADDYFKFQDEGVNAVGTTNHGSSFSFKYPGVSPRMAKAIQEWKGFDMSHAYAVASSIKQHGIAPKNIIENVLSEKTLDAIARDLAEVTGLMFTINFEKETKQWQ
Ga0209191_10003469	F012672	N/A	MAYSDEFVLNLEQLALIYIKECCAHQKEQVTNKGEIVLVQDRHIPTIDYFLRIWIPIIREEKGFVPSTWYAWLNGEDKLKSDTIKRIDELFKGLASDIVANEGKGIFYAKNRLGMHDRQQVETRTVDKFDFE