Scaffold Ga0209191_1000075

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000075
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78894
• Total Scaffold Genes: 122
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 104 (85.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019798	Metagenome / Metatranscriptome	227	N
F028490	Metagenome / Metatranscriptome	191	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100007581	F028490	AGGAGG	MAENRGGANGGPQYNPANVSGTGGAGQSGNYTGFAYGQNQQVNNQRVEGNQAVSSVKASAPAPDPTYGGMNFPQLGTLMDPTARPAEPITAGVDFGPGPGSEALPSQFQNNTRPDENTLIAKQYLPELVIAARSKDAPDSFKRFVNYLMAR
Ga0209191_100007582	F019798	GGA	MTTLVAIQGDGWSVLGCDSRLSDEHGRFQVSKTPKIVENNGVLIAGCGSSRTSNVLHYGYVQPKPTLKEDLNLYMTQKFIPQMRKNFIDAGIDIKEDGDVAQNEGGFLISVKGQVFSVSDDYSWDTDVRNVYVMGSGGDVALGALAALGVEKVKTVNQAETMIRKAIAIAIKYDNMCSEPIYTFKQYS
Ga0209191_100007589	F085348	AGGAG	MSQPTGVALRVTNKDGKESFPSYEAWGWDKVNDIIQGTLAIDHVAKVEIVDVNIREGM