Scaffold Ga0209191_1000020

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000020
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130346
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F015338	Metagenome / Metatranscriptome	255	Y
F018716	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_1000020102	F003080	AGGAG	MTTAKDLCDQLINRAKNLQEFVVERDFDHIPTGVVKFSIQHTVGQPARIFVPALTQTEAEAMVDEWFEEDTE
Ga0209191_1000020105	F018716	N/A	DHQSVPWWNECCAMVMEVFGLPGHRFVYTPHEDFMTFKFNNEKDADLCRILLSERL
Ga0209191_100002088	F015338	AGG	MALKSGKPNPLNYFDLRRVEFACPHFKYATIEKYNPVLLKSIDSWIRANLNNRYYIGQSLSLDNTNTIVYNTSIGFESEKELSFFTIACPYLQMR