NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1000020

Scaffold Ga0209191_1000020


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1000020 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)130346
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003080Metagenome / Metatranscriptome508Y
F015338Metagenome / Metatranscriptome255Y
F018716Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_1000020102F003080AGGAGMTTAKDLCDQLINRAKNLQEFVVERDFDHIPTGVVKFSIQHTVGQPARIFVPALTQTEAEAMVDEWFEEDTE
Ga0209191_1000020105F018716N/ADHQSVPWWNECCAMVMEVFGLPGHRFVYTPHEDFMTFKFNNEKDADLCRILLSERL
Ga0209191_100002088F015338AGGMALKSGKPNPLNYFDLRRVEFACPHFKYATIEKYNPVLLKSIDSWIRANLNNRYYIGQSLSLDNTNTIVYNTSIGFESEKELSFFTIACPYLQMR

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