Scaffold Ga0209191_1000007

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000007
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 201439
• Total Scaffold Genes: 259
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 166 (64.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F006698	Metagenome / Metatranscriptome	366	Y
F011670	Metagenome / Metatranscriptome	288	Y
F051136	Metagenome / Metatranscriptome	144	Y
F093881	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_1000007197	F093881	AGTAG	MKQGFIAQEVEKAFPEMFVINDPRPTPVLSVTAPPENNIVFHAGQLEMLKVTEDGFYVRGVKVEADEKEAAAVYKAFKAFLVHHALTRNQL
Ga0209191_1000007200	F051136	N/A	MIDKDWLERVTIAYQAYPYPSKEVERFIQWLYKQYGIVEPVKDKNENRF
Ga0209191_1000007250	F011670	GGGGG	MEISRAEQSIIKYNLEQYRVDQTRLEKQRTDDYAKKIEERRLEQIIAERVSRNLRLDLDKGRNIDIEC
Ga0209191_10000076	F006112	AGGAG	MKQDYTMYIYKRDARTKTGERLYSTTVWADRTEEGMRRECNELYDLYPATKGWRFEYVPSMKTVRNLMSGKDIQIPHDTPRSCDPSSELYWSM
Ga0209191_10000079	F006698	AGGAG	MTRYYDELAAYERNGFDIIVDKSYEDMDPKDCFDDDCFNIKEMYSDIECGNLDWFMLRVRVMVENIELSSEFLGGCLYKDAREVLTDGTAADLIDQAMVTAKKDVYRLYKKFQDISWELDAEGCNV