Basic Information | |
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Taxon OID | 3300027969 Open in IMG/M |
Scaffold ID | Ga0209191_1000007 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 201439 |
Total Scaffold Genes | 259 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 166 (64.09%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006112 | Metagenome / Metatranscriptome | 381 | Y |
F006698 | Metagenome / Metatranscriptome | 366 | Y |
F011670 | Metagenome / Metatranscriptome | 288 | Y |
F051136 | Metagenome / Metatranscriptome | 144 | Y |
F093881 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209191_1000007197 | F093881 | AGTAG | MKQGFIAQEVEKAFPEMFVINDPRPTPVLSVTAPPENNIVFHAGQLEMLKVTEDGFYVRGVKVEADEKEAAAVYKAFKAFLVHHALTRNQL |
Ga0209191_1000007200 | F051136 | N/A | MIDKDWLERVTIAYQAYPYPSKEVERFIQWLYKQYGIVEPVKDKNENRF |
Ga0209191_1000007250 | F011670 | GGGGG | MEISRAEQSIIKYNLEQYRVDQTRLEKQRTDDYAKKIEERRLEQIIAERVSRNLRLDLDKGRNIDIEC |
Ga0209191_10000076 | F006112 | AGGAG | MKQDYTMYIYKRDARTKTGERLYSTTVWADRTEEGMRRECNELYDLYPATKGWRFEYVPSMKTVRNLMSGKDIQIPHDTPRSCDPSSELYWSM |
Ga0209191_10000079 | F006698 | AGGAG | MTRYYDELAAYERNGFDIIVDKSYEDMDPKDCFDDDCFNIKEMYSDIECGNLDWFMLRVRVMVENIELSSEFLGGCLYKDAREVLTDGTAADLIDQAMVTAKKDVYRLYKKFQDISWELDAEGCNV |
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