NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1000007

Scaffold Ga0209191_1000007


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1000007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)201439
Total Scaffold Genes259 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)166 (64.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F006698Metagenome / Metatranscriptome366Y
F011670Metagenome / Metatranscriptome288Y
F051136Metagenome / Metatranscriptome144Y
F093881Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_1000007197F093881AGTAGMKQGFIAQEVEKAFPEMFVINDPRPTPVLSVTAPPENNIVFHAGQLEMLKVTEDGFYVRGVKVEADEKEAAAVYKAFKAFLVHHALTRNQL
Ga0209191_1000007200F051136N/AMIDKDWLERVTIAYQAYPYPSKEVERFIQWLYKQYGIVEPVKDKNENRF
Ga0209191_1000007250F011670GGGGGMEISRAEQSIIKYNLEQYRVDQTRLEKQRTDDYAKKIEERRLEQIIAERVSRNLRLDLDKGRNIDIEC
Ga0209191_10000076F006112AGGAGMKQDYTMYIYKRDARTKTGERLYSTTVWADRTEEGMRRECNELYDLYPATKGWRFEYVPSMKTVRNLMSGKDIQIPHDTPRSCDPSSELYWSM
Ga0209191_10000079F006698AGGAGMTRYYDELAAYERNGFDIIVDKSYEDMDPKDCFDDDCFNIKEMYSDIECGNLDWFMLRVRVMVENIELSSEFLGGCLYKDAREVLTDGTAADLIDQAMVTAKKDVYRLYKKFQDISWELDAEGCNV

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