Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1004926 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1004926 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9297
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (89.47%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9297

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (89.47%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F022371	Metagenome / Metatranscriptome	214	Y
F058800	Metagenome	134	Y
F073257	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10049261	F058800	N/A	WQMKLALSWLLYFLGDIISRTLLRTGLGYGLYKTLMLWSVELDDKFNVWKEVKPSGRGKK
Ga0209400_100492612	F073257	GAG	MKDTEGTKHKFYYGEETYTICVTKDDWWLEEPVDMSELMMKCGEEFALDHGMMPPEGLCAECWKGKYLDIVEDYHIGGTTIKDLDLRRCYKCKHTVLPWQSADRVDKVLEALKKPVELCPTCRKSNTIEFTGDLKMDSVCKLDGEPFTAPNITRTQCPECKDEFFTMSECKKIDAAIKAEQERRGLK
Ga0209400_100492618	F003962	AGG	VGLNQDREQLKAAHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSFEVFEAQWNGLTEQVNRLSGFFESHQKALQSLQNSIPDDFDNDEVDDQ
Ga0209400_10049262	F003304	AGG	MKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDSGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIKEDEAKLVELGR
Ga0209400_10049264	F022371	AGGAG	MLCLLELKDIVWVISWFILYSWLILSIIYCAGYIILKLIDFIRKELDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1004926

Overview

Ecosystem & Geography

Associated Families

Sequences