NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1003512

Scaffold Ga0209400_1003512


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1003512 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11384
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065782Metagenome127Y
F067675Metagenome125Y
F073469Metagenome120Y
F105049Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100351219F105049AGGAGGMAKALPIEHYRETYRSHMTRAGLFGVPSAEFNDRVRARLAGGYKPTPQQWSSAAYLTVQAIAGRKCCPKASGRPCMCEDSFNCPDHGVTCFGSHD
Ga0209400_100351230F065782AGGAGGMATRSVIGYIQDDGSYLGVYCHYDGYPSGVGSFLLKMNPEDIKTMVTAGIIKGGIRSIYSSDLTEVEYFDESWPHARRTQLPGGEEYDYILDADGTLTCTDSQGNDIPQDQWHR
Ga0209400_100351231F067675AGGAGGMALIITRPTQSTTFPDGSGRNAVVQNGSGQHFLVSEVHRGQGFTRIDETLVFPCTAEGEVTEWSEVWSGNSVEDVLSTFNG
Ga0209400_10035128F073469AGGAGGMARSLKDVNLKHRTRTLADIRLIRGFNRAAHFAAGGTLEAWRGRSDVRPDKRKDGNRRACRGPVRDD

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