Scaffold Ga0209400_1001363

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1001363
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19745
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (50.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012433	Metagenome / Metatranscriptome	280	N
F025739	Metagenome / Metatranscriptome	200	Y
F030060	Metagenome	186	N
F033350	Metagenome	177	N
F045612	Metagenome	152	Y
F074559	Metagenome	119	N
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100136310	F074559	N/A	MKAQNPWQKLLQEHIKDKFAPPPPPGYHTREEVSKLWQKSMNTTSRMLSQMLLEKKVDMKRHPFIIPRKDHRVVRNLKIYKIIPTKSPRK
Ga0209400_100136314	F025739	N/A	MRKLILGFTATSVLLCGCVTTRPYDIGEVPNQDSITDFIMRWDKLDRTKSTPEEYRQLFGQSLKTISRLVEENERLRKRLDQ
Ga0209400_10013632	F033350	AGGAGG	MSAVDVEVPETKWSMLVWKTLKEKPHNDERVLMDIGGEVVVGRFIDGSFVSRSWGHSENDVRLWARWPKAPKW
Ga0209400_100136320	F093506	AGGA	MSATIISNISSFDYEPDIQTDNGRDGITSFQFSIVGGFSALNSNFSLGQDISGVPDQPPGNFKVVRRNMSHIAGNTIDGLYRVEITGEGGTGDNSLFVLETSYQYQKEIVSGFIQLPAVDTQISYICEWLSPTVTITTNSQTEDVTDVQSRAKALVANQQVQIIRNKPDRIAPVGTVLYPVFGAGIDENAINIIGSSVETAGGLFRVRASATKGQMQLVI
Ga0209400_100136328	F012433	GAGG	MSADQVADLRERLARIEERQTNIISILERHTSELAQWTSKINSKVDTLERESHTIKTKLWLVALVSGAIFSTIWELVKVRVFSR
Ga0209400_100136329	F045612	GAGG	MSSLKWLEAEGYIEKFYDNNGDLCVRVCEGAEDCEI
Ga0209400_100136332	F086811	N/A	MITPQFKVEDALARLLTPISGLNVLVSNRTGSRLFPFVTIKASLGKQYIVPYSGVFEVSAEINYSDSAAKATQAEFDATYYNVFSSLYSPTLTLAEKVQDKVTDLKIFMGRITSQSPTIRADKRAWQRGLTLSFVVTPDTTADGTRNYDFSDFLNSFYLGTI
Ga0209400_100136335	F081046	GAG	MTPKTIKYSQRLGDIIRCLPACKYLADQDHEVFVDCLPQYHGIFEMVSYAKVGSKGDVIDLEIWPNKYQEYRFSNKTWTEFVYSHPAINKADPTNILFDKLDDKPAKGLPAEYNMVAPFGISQGHKRDPLQIIVEARKKCGENNFFVLCPPGMEINGLQTYTAPNIPDMARAIRGAGEFWSIDSGQMAIAAGVRKESKVVYFPQTNAPFDKDNIFIWDSVELN
Ga0209400_100136337	F030060	N/A	MTKGIVTSESPEIHWQHLNVAGGRVLDLGCAFWTETERQEANGTTKYFLSQKPEFYMGVDINQGDINTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFMDWFDSIGFECYRHDSVSFCAEISVIYGRLKC