Basic Information | |
---|---|
Taxon OID | 3300027963 Open in IMG/M |
Scaffold ID | Ga0209400_1001310 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 20143 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (37.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012760 | Metagenome / Metatranscriptome | 277 | Y |
F021985 | Metagenome / Metatranscriptome | 216 | Y |
F040538 | Metagenome | 161 | Y |
F057305 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209400_100131012 | F021985 | N/A | MTNDSKKFDHLHAILFREAKIILSKYEAYLQDKITSKELAQKMLNLKDVIKKIEDAK |
Ga0209400_100131020 | F057305 | N/A | MAKQRIKNKNRKLNEDFSYYFVAHVDSSGEVTPLLLTDVEYKKAKQRAVKNKEDVPENFIIFSQGFKS |
Ga0209400_100131022 | F012760 | AGGAG | MKIPELVYEIRNLARKEEDPIKKDLFYQCAKSMEILGNLAKIGDLIVAEQNGSTGPIKNTEDEIKWAIDDESLRMMDEHIESLIHYKFMDKNDRWPYDNEDIKLFVSKYLKSQIVNDSNT |
Ga0209400_100131024 | F040538 | AGGA | MEITTVDRPTKLQRVFDFMRSGTALTAGEARKRFRVSNMRATMHDLREAFDRFDMNYAVVRETKNGRSYYRVVRNRSR |
⦗Top⦘ |