Scaffold Ga0209400_1001310

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1001310
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20143
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (37.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012760	Metagenome / Metatranscriptome	277	Y
F021985	Metagenome / Metatranscriptome	216	Y
F040538	Metagenome	161	Y
F057305	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100131012	F021985	N/A	MTNDSKKFDHLHAILFREAKIILSKYEAYLQDKITSKELAQKMLNLKDVIKKIEDAK
Ga0209400_100131020	F057305	N/A	MAKQRIKNKNRKLNEDFSYYFVAHVDSSGEVTPLLLTDVEYKKAKQRAVKNKEDVPENFIIFSQGFKS
Ga0209400_100131022	F012760	AGGAG	MKIPELVYEIRNLARKEEDPIKKDLFYQCAKSMEILGNLAKIGDLIVAEQNGSTGPIKNTEDEIKWAIDDESLRMMDEHIESLIHYKFMDKNDRWPYDNEDIKLFVSKYLKSQIVNDSNT
Ga0209400_100131024	F040538	AGGA	MEITTVDRPTKLQRVFDFMRSGTALTAGEARKRFRVSNMRATMHDLREAFDRFDMNYAVVRETKNGRSYYRVVRNRSR