Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1000681 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1000681 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29354
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29354

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F010448	Metagenome / Metatranscriptome	303	Y
F014843	Metagenome / Metatranscriptome	259	Y
F019092	Metagenome / Metatranscriptome	231	Y
F075656	Metagenome / Metatranscriptome	118	N
F102506	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100068110	F010448	GAG	MKNGDISNVSSPQVVCVTDVVIPLVEEVTKRLLITKVNLTLGEINLQSANKLWLLSNNYGISLELAGYADQGWTEDLLEKAFEKLEREVVNPFNYWHLYADPGELVRKLPYRANLRGVVDVQWRVARYGSAGVELDKL
Ga0209400_100068132	F075656	GGTGG	MLSNKQFANLANQGGASRSFKTGKAPEGPGVMVSIPGAEKVTDAPYTAEQAQGFKTEYAAKAPVDAYQGAWKTGKKMFADISVKQKTLPDARKAGIKNSQIAGYDLGGTDKRRMSGGNIYFGRKVPGVESNPEFVASAHATSEIERMEPKPKAQEFAEQSHISRGATNKGKKISVNEVYATIAKNRRNRGV
Ga0209400_100068139	F005167	AGTAGG	MAVNSSRSMNKSLDDGATDGKYRKARPDTEVGPESSGTETNRQSLHPFYGYGFTTTEYPAKVNPGK
Ga0209400_100068143	F019092	AGGAG	MSNVPILGQKKQDNEPKFRLLYCLVCQTLEELPPYDGAPEQDHLLEIACEQHVFPSGEPHKGKLFVLPLKAWAKTESKKEIIRQIKGGGSAGIAEVDDTFYESRSTFMEDAMTCYRQHNKPKDGCSDWHIKDKMLVPKTIKERRAEGMEKYEESAGPKTYLCDFCPVAISVAQRKRKLMGIE
Ga0209400_100068146	F014843	N/A	MTSRKTEDAQHWLNSHGIINYDDLIDYSFHLEGEDLKKRQFVMSRSRAPIEMYVDSDPAMCAWVFEEQGIPAIMFMNPGYLSVERRPDAPKKVRTWNQIEESINRVNIARSKDAANPKELEFWDD
Ga0209400_10006815	F102506	AGGAG	MAKKVVKTFSANLNKNLEKGGAWMAIVNVTTDGIEGSNVVNMAAWSNASAGKRWVKSQVQALTPRKSVKMIAGEGKDLKGKPTSFVGVVTFKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1000681

Overview

Ecosystem & Geography

Associated Families

Sequences