Scaffold Ga0209400_1000640

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000640
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30399
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006135	Metagenome / Metatranscriptome	380	N
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F053897	Metagenome	140	Y
F065720	Metagenome / Metatranscriptome	127	Y
F067673	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100064017	F006135	N/A	MSTKIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHQGDIDWLNVKAMSSDDLNATFGSAYTSAKSNTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTVAYNGVQSTPMKSE
Ga0209400_10006402	F037195	N/A	MNIFNPTKQQHDPVDLMKQADHLLNKTERKQGWPYYDLKHAIQFAQMVVKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFLVDKGAGILRGQIHEDDIPLVSELSEKVQISVRKVNLIIELVEPVDNILDAMTPLMGGSDEDPFTFNEEIFRDQIAEFMNSGEIGSQASWQNYTSSAEKYARQLALQDNTILIETTPTELIVMKMSEEMLKGLE
Ga0209400_100064021	F053897	N/A	MSAQINAIKLFDWVLNHPGRKAAFGDSPDIDIVMHCDRILQGKDNELFVIEKETETPLIALWCELDHDRKNIHILTILGDRGSLREAVNAWTDLYPDWSVSGARRKSKQNVQYKLSEFSK
Ga0209400_100064023	F067673	N/A	MNSLIQQVSETVGVLPDSQDKETQVLAWLNRAAVMIYDQYDLPGSVFEQFFCVDNNQHVVTFPWYVGAIRGVRWHDSSRLITLTDMRPRYHGVPWTQPYLKWRQIQSTPLHTPLTNAGPLTFQINAAETQPFDVIVNGQTSRAANVTEILTFNVGDTVKSTVNLFEPESPFGITSIKKSRYTNSDVIILNSATQGEIGRIPNNQLYASNLRVQILDYNASTPFIVGEDCVEVLFKQRFSPFVNIDSIWTDERLIQALVYAVKYIYAMEKEKMDVASASKDMFETICKKVCENLESGTELMVQTERHATQNASIMFPTWPLVQGGVRNLW
Ga0209400_100064029	F065720	AGGA	MSFLSDLVMKLLRWFYELSQKDLTSQDAQKDDKLKQNLLARIDARERELLVESNLRAERAASALSRVDKSPRVGFRFKRPESTITKQDNNS
Ga0209400_10006404	F043895	N/A	MKPLMLAITIFATETTLIALHQDFEAKLRAISQIESNDNDKAKGRHGELSRYQIKRAVWRQHFPDEKDMRHVPAEARRCAKAHLCWLELKLCLAQGTKHPNPRDVYAAWNIGLKAYSRRDYTLAKLPSNIRQRADRFTNLYEDYRNHQ