Scaffold Ga0209400_1000537

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000537
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33177
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.87%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F011136	Metagenome / Metatranscriptome	294	Y
F026004	Metagenome	199	Y
F027408	Metagenome	194	N
F037731	Metagenome	167	N
F040621	Metagenome	161	N
F042339	Metagenome	158	Y
F043894	Metagenome	155	N
F053068	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100053712	F040621	GAG	MLNFNVPLHIQRERLATCKKCKFFKPLTQSCGTLIVGNTVDPEENSVTHYKEKIKLCGCIMPIKTKFVFSSCPAHKWFALDWKDEEIAALDEFIHRIHKANKIEPHDLHQLYEWFGKMTKKYQLPSGCASCIRELITEFRRQLNKVDK
Ga0209400_100053713	F011136	GGA	LHEVLARLMDRPEQDVQDIVCGGKVEQYVNRALWLSWHSNRSDYAIKYRKYYELHTEKSAEDSKQDETWIGAFVDGEYLYSAIGRMHEFDAILLRLYSKPDFNYKELSSTTGIPYPYLRTAIHRALKKIREHVELQRAIAHSKREASDL
Ga0209400_100053716	F043894	N/A	MRQSNELNGLIARTVGSKAALLRAMQRSNTPIVKKTLHNWCVDPGSIKLRQLMNLSNVMQLPLCEIINSITIKNEGDE
Ga0209400_100053724	F027408	GAG	MQYDKQREIELLRKLFLLTAKRSMRPAMSDNMAMRLIFEELLLLTDKDEYKL
Ga0209400_100053731	F009003	N/A	MKAKDKAWQLYSNYFDIVEGGEQYGQLALVHIKAVNAALHSVNEALTYAPDDIVNDFEGTGEYYSVKAYYMHVKSELLKLNKYEAKGNVKHDQ
Ga0209400_100053733	F053068	AGGAG	MTQQKKETAIRRLHMALKKRFQGQAINMPWSEMEGFLNAAQTVEMNHIHDAYHEGYTDCKAGLPNKTQQNDSNINI
Ga0209400_100053737	F042339	N/A	MEIDSLYQLERLKTTYYAKITGIQAQSYETLAEIYANKQAIEKAIATEKDEEIKQLKKRNRRLIITNTALTLGITAVAVSTIYFAIL
Ga0209400_100053738	F026004	N/A	MEENKLRNTVLIAAVASVMLIMIIVGMKTCNENTDPAVDRLRSINDSLYDVIDQNNQKADSLFLKIDSLNIHQDTIIQQQQITNEIYRNETYNILSSTPSNANAQFRATLKKSDSLLKAGFYTRTYNLRSAAFQSQLQ
Ga0209400_100053740	F037731	GAG	MEEQKKQTVTKSNALKSLRYKLQLIDGLWSIPLAFLVFAISGTVSVAYFNDAIISTEYIQYIVLAALVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVLLYLCLYAFYFAAYLYILHMLMTVTA