Basic Information | |
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Taxon OID | 3300027963 Open in IMG/M |
Scaffold ID | Ga0209400_1000025 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 143095 |
Total Scaffold Genes | 201 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 144 (71.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003826 | Metagenome / Metatranscriptome | 466 | Y |
F004641 | Metagenome / Metatranscriptome | 429 | Y |
F067732 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209400_100002522 | F003826 | N/A | MDPITIGLAFSAAQSAVSYIKQAVALGKDINSLAGQFSKFFESSDAIHRERTKLKAKANLLGKTDAELGHEALQIAMHSDALRQAERELKDMILWQLGKPQIWEQMIAERTRLFKARADAQRAEEERQLAHKKKMADQFIFAMYFIAGSIILFALAMGGIGIYGAMEEKRIYEEKVAKRLLVIRQQQKEREKKEREDRDKAIGGG |
Ga0209400_100002524 | F004641 | AGGA | MAEKTAEQAHEKGAFIEKLLFALLPLLVGSVGYLIQALGSIQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLRQDLEKEIQKNRDAIMENRTHIAILEDRAGVTKKVGPLKEH |
Ga0209400_100002529 | F067732 | N/A | MERNMKIETAIGILEKERQFLGMGFLDLLQDIQKHGKMIYSERVMEAFERFMIDGRRMFATVA |
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