Scaffold Ga0209400_1000025

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000025
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 143095
• Total Scaffold Genes: 201
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 144 (71.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003826	Metagenome / Metatranscriptome	466	Y
F004641	Metagenome / Metatranscriptome	429	Y
F067732	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100002522	F003826	N/A	MDPITIGLAFSAAQSAVSYIKQAVALGKDINSLAGQFSKFFESSDAIHRERTKLKAKANLLGKTDAELGHEALQIAMHSDALRQAERELKDMILWQLGKPQIWEQMIAERTRLFKARADAQRAEEERQLAHKKKMADQFIFAMYFIAGSIILFALAMGGIGIYGAMEEKRIYEEKVAKRLLVIRQQQKEREKKEREDRDKAIGGG
Ga0209400_100002524	F004641	AGGA	MAEKTAEQAHEKGAFIEKLLFALLPLLVGSVGYLIQALGSIQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLRQDLEKEIQKNRDAIMENRTHIAILEDRAGVTKKVGPLKEH
Ga0209400_100002529	F067732	N/A	MERNMKIETAIGILEKERQFLGMGFLDLLQDIQKHGKMIYSERVMEAFERFMIDGRRMFATVA