NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209820_1000024

Scaffold Ga0209820_1000024


Overview

Basic Information
Taxon OID3300027956 Open in IMG/M
Scaffold IDGa0209820_1000024 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39619
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (53.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028149Metagenome / Metatranscriptome192N
F042808Metagenome / Metatranscriptome157N
F083941Metagenome / Metatranscriptome112N
F090287Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209820_100002421F083941N/AMPEESLHNLEVRIVRLETIIGDKDAGMVSVIHGIKATLEGLKQFQWKLFGGLGVLVVLAQLIGRMTLK
Ga0209820_100002425F090287AGGAGGMPALTSQEIASLSGCFDCLSPGVKDTYMVTLLNQILAAAPGAPLTTTSPGGLLTATATSAANPLRRKFTLQNQKNEELFVKFGTGATTSNYHIVLPAHNTGNKHSDALMLDGYIGAISVAATAGSPSYTFAEFV
Ga0209820_100002427F028149AGGAGMASGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELSSSLLGGNAFACAAGLPPINFSWVGTGYSVLRVTDNAAAAITAASLGRLTPEILQSRVTRQYFLGAIQAGKDGYDSLQLHTDKDTFRYLSKTNATLYDAWRFGVFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFNATATPGNYTLVLPYKNVAATEGIKSVFNEDYDKAQYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPVCEADPGNPAQDYNSADPVCPSVIQFTAVINDADPARYVIGTTGIMCDDNIVANAGISSATPAALVIALQAAWDAEFGAGQGTWSVVSGTLIQLAGSSCTNVTLEFEI
Ga0209820_10000248F042808N/AMVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFDDPTVVYNGGYYNAAVQKAFEKGQFQGCGTYIADDTDPFLFASIGGKVFQIDINGGFKVTDLTPINFTFQVLTRGRVSNVATYVCGVPHGLSPGMVVRLPEPPGAFFPEGFFGDFIVETVPSPTTFTTYSPGIDAGPLLGPLFNAYQMATNDPQASHVYFQQAENWLVIQDRQNQPYLYNGSTLRRATGDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPGYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNQESIVAVNGDLIFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTEFYLTAASAVNFDNRMLMTIQPRKINNRGIVHGGLVVMDFDLVSGMGRKLPPAWEGIWTGVDVFQMVTVRVKRTERCFMFGLNQDYIGLYEVTKNGQFDFDGFDDAPIDWTIETRSLTFAEPTNKKRLVSAEQWYDQVMGDIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPTRSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSA

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