Scaffold Ga0209820_1000024

Overview

Basic Information

• Taxon OID: 3300027956
• Scaffold ID: Ga0209820_1000024
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39619
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (53.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F042808	Metagenome / Metatranscriptome	157	N
F083941	Metagenome / Metatranscriptome	112	N
F090287	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209820_100002421	F083941	N/A	MPEESLHNLEVRIVRLETIIGDKDAGMVSVIHGIKATLEGLKQFQWKLFGGLGVLVVLAQLIGRMTLK
Ga0209820_100002425	F090287	AGGAGG	MPALTSQEIASLSGCFDCLSPGVKDTYMVTLLNQILAAAPGAPLTTTSPGGLLTATATSAANPLRRKFTLQNQKNEELFVKFGTGATTSNYHIVLPAHNTGNKHSDALMLDGYIGAISVAATAGSPSYTFAEFV
Ga0209820_100002427	F028149	AGGAG	MASGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELSSSLLGGNAFACAAGLPPINFSWVGTGYSVLRVTDNAAAAITAASLGRLTPEILQSRVTRQYFLGAIQAGKDGYDSLQLHTDKDTFRYLSKTNATLYDAWRFGVFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFNATATPGNYTLVLPYKNVAATEGIKSVFNEDYDKAQYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPVCEADPGNPAQDYNSADPVCPSVIQFTAVINDADPARYVIGTTGIMCDDNIVANAGISSATPAALVIALQAAWDAEFGAGQGTWSVVSGTLIQLAGSSCTNVTLEFEI
Ga0209820_10000248	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFDDPTVVYNGGYYNAAVQKAFEKGQFQGCGTYIADDTDPFLFASIGGKVFQIDINGGFKVTDLTPINFTFQVLTRGRVSNVATYVCGVPHGLSPGMVVRLPEPPGAFFPEGFFGDFIVETVPSPTTFTTYSPGIDAGPLLGPLFNAYQMATNDPQASHVYFQQAENWLVIQDRQNQPYLYNGSTLRRATGDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPGYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNQESIVAVNGDLIFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTEFYLTAASAVNFDNRMLMTIQPRKINNRGIVHGGLVVMDFDLVSGMGRKLPPAWEGIWTGVDVFQMVTVRVKRTERCFMFGLNQDYIGLYEVTKNGQFDFDGFDDAPIDWTIETRSLTFAEPTNKKRLVSAEQWYDQVMGDIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPTRSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSA