Scaffold Ga0208429_100482

Overview

Basic Information

• Taxon OID: 3300027932
• Scaffold ID: Ga0208429_100482
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5954
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018963	Metagenome / Metatranscriptome	232	N
F033507	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208429_1004822	F018963	GGAGG	LDSLGDRPVGAKLMFPYVRGEDGSVTDTLIMSFRTKRVVYSKLSVNKFGHGYRAYVLLPANYVMYEAYRTGKGRASIKVSVIDVSPNPLSHFRVKDIWVMYEGVSPVTLLEDLPGNIRVIIEGNSGELPLYEYLETEVPK
Ga0208429_1004824	F033507	N/A	MVKSNIAEVVASTTSSGSGGTLTVNLSVTCPSSATGCNVNQIDGVYYLYPILNGYYTCGLQMNNQSVRYNWILNVSATPVSLASGATVSVEITYFDTYPNKPYYTETWAFTLNSNGQASGEFSTCMVPVTIFPESSVGVKVVGVKSATDQSIPYTSSGITIIPED