Scaffold Ga0209536_102042801

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209536_102042801

Scaffold Ga0209536_102042801

Overview

Basic Information
Taxon OID	3300027917 Open in IMG/M
Scaffold ID	Ga0209536_102042801 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	686
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048942	Metagenome / Metatranscriptome	147	Y
F071153	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1020428011	F048942	N/A	KELKDDAILDIKVNKSFYLMAKAASFIVLQGMNIQDKGDEYFKNILTKKYEELDDQQRTFYTLVLLLAEIERKATEENLYIEKEILEPGDEGYEAPSTQG
Ga0209536_1020428012	F071153	GGA	MFSGKFIKKNGKLTYATPKDKLAYEIFIDMISEGEIIDMFLEVSSPDHSKAQLAKVHACIRELAKESGYTFDEMKQVIKEHAGLAGKSFGDCSKSDLMLAIEACIQIGRENYNINLG

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