Scaffold Ga0209536_101378915

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_101378915
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 861
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F020342	Metagenome / Metatranscriptome	224	Y
F089995	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1013789151	F001807	N/A	MTVLAIEHTSFTDTHVTVTAVVDEMRLLYRANHLEPEEWSPALCQATIELDPEEPIPLDEDGFCAYLDDLDPQWQLLEHDDLD
Ga0209536_1013789152	F020342	N/A	MSAVTDNLNMFDRINLAACARRRASANVLNPTRFEGEYDTARLWMKYRLVKYSTYSYIDE
Ga0209536_1013789153	F001120	N/A	MTKDKSPLNFDKTIAGFNVTEHGIQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLI
Ga0209536_1013789154	F089995	N/A	RLQAMQLVAKMKESADKYGIGFIGGFVAPNGEKFVMSNMDDEDTQTLLPDNLK