Scaffold Ga0209536_100117459

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100117459
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3375
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1001174591	F006109	AGTAG	MTRYVVMVEDRWVTAVYDSGKGIGFTQSQEDASSWVTYERAIAAARTVAQSCNCHAAVHSVDEPAYPQSWK
Ga0209536_1001174592	F017122	N/A	MEVTPFQEQLNPELRLGEGRSRTCSANAMLFELKIWLPGQGAMRDLVRAESLQQAIQFAQNRYPNCKIEVPSTAAKKPKLVRSTRGPKERARQNLRLLEGKREQNDR
Ga0209536_1001174593	F003805	N/A	MRPIEHTTESCFHKAAQDQWLVDLFNRQDYRALLEAALVLNTLHQLERTKAAWAIREAANNLAEQFGLDRDSA
Ga0209536_1001174597	F002867	AGG	MSVISTTDYGNGFVIDQLENERGELYYRACTGSICRYAEDQYIAVMYLENMGWDPTQQVP