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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027917 Open in IMG/M |
| Scaffold ID | Ga0209536_100046312 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5745 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | White Oak River estuary, North Carolina, USA | |||||||
| Coordinates | Lat. (o) | 34.640199 | Long. (o) | -77.109447 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003687 | Metagenome / Metatranscriptome | 473 | Y |
| F021097 | Metagenome | 220 | Y |
| F034920 | Metagenome | 173 | Y |
| F035274 | Metagenome | 172 | Y |
| F095396 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209536_1000463121 | F034920 | N/A | MAEKKKKDKKWIQGMEMKEGAFTAKAKRKGITTAQL |
| Ga0209536_10004631210 | F035274 | N/A | MITIGKEDLDKAIAMFKIEDYYISCKTSECYIHWVALTEQAREYIDAYFECLDVLIDGQWVDTYGSHEQGNPVSLPDQDYIACRYIIATN |
| Ga0209536_1000463123 | F095396 | GGA | MNPKNRAERVVALGAIENEAQKLAEEGADAIAIKSFTVGARKKLAEERPDTEQYFDAAVAAKKAKNNF |
| Ga0209536_1000463128 | F021097 | N/A | MSNNHFVDSCVAFILGTGLGLLTSVGAQKALNKHYQATCHDRPGHNLIYVQGFLGDTYYCINSKYIY |
| Ga0209536_1000463129 | F003687 | N/A | MNYQAVEHLLTQDARLLARRDAPVIDQELEAQRQAALELFFEWQDGMRQFQDLVPFVAIVQRKVDLNRDLLRWERKQLEQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |