NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100006975

Scaffold Ga0209536_100006975


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100006975 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17178
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001299Metagenome / Metatranscriptome727Y
F012328Metagenome / Metatranscriptome281Y
F015856Metagenome / Metatranscriptome251Y
F030356Metagenome185Y
F079653Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209536_10000697511F030356AGGAMLNIKNIPVQDINQNVKTNATFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVITKGLMPNGEINFEFVAENEDDEVGARQATDMVSKVVNQMNDPHFILERWVMDANMHKNGMMMIKPVREQIVRYIETQGTADQLKAFELQAAEAGLTALRQSRRRISVDMEKVMEEVTVLMGEQKKEFAQGVIGQFMETLKAAPGEESMDSEDVLMSENISEQQDILNESIKRNTIYSAKYKLTGYNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEVTELYPGIDLKVFEQFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRMVSVVTVWNKYDIDGDGELELIELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGEAAIFILDSKFDPAKDIYQMPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGIKLQMALSPNQIIQDNTVRNAAEGLKEALYLVWRTLIQYGDDYGVKKLAQAVHPDKKAEFLDFLAWDDMNFCERKQIHLELALGMMSDENALGRLQIIQKCQNDLYQVTQTMVAAGTLTPEVYKKVKKPFADTLYVLGVKDCNVYLPSDEEVSAMIKQAQEAQKGKTPSPEDQKDMSVAELNKIKAQQIAAQIEGADPDTQLNYMSIAMGKSQDYGH
Ga0209536_10000697513F079653AGGAMFICAIEQNTMILCEKHAQAFEAAALVAGTPHTVYELDEEDALEAKCHACDLQDELTRPRIILPD
Ga0209536_10000697517F012328AGGAMKKNLTPPSTAKVDNPWDEAPTQEPTAEDIRAVAEQIAATAPQAPRALNALDFDLEGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGQEIDPKYIGNENPYIDKTELVPVEELKDAPARDKTLPERNQVQNLFVSNQIPHTDFESRMQDKKVSVIFRKYNSGEISYEILGPVDQRPHGVKLDKYGRERPEIIKWVDPRSGEQTVVRNDGTLTPQGRKLRALMQTFKVNNSNYWDVWIDREFISLSDNIQQNVWDLNT
Ga0209536_1000069756F001299N/AMNDINKPEYLDGKDPEKNLDYYRQDHGGMVTTHNGVADKLLQNNDLYRSMKGDWTRTEANRSGNIIVTTGREDGKFYIKREQQNTEAIKQAVKNYRHAAEAGIPDPLAPIGEDGKLTWKWMDLPHVIAIRISDQYFDGIPWNALKNDRTLKAQFYKVVETEYPEYVCYPGGKLPIPVQVPYPTKKGEKKYFRGH
Ga0209536_1000069759F015856AGGMIDNNTIDFYNSRLTIDISQPSKLTTSQKDQVRHYGSLAEALLKNRDLAMFVHHFKFSLADELASIRSHGPEDNTRRIAISNELAGIDNFVNSLKRAVYYKNRLMQADMPGNAEAPGN

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