Scaffold Ga0209536_100006975

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100006975
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17178
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F030356	Metagenome	185	Y
F079653	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_10000697511	F030356	AGGA	MLNIKNIPVQDINQNVKTNATFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVITKGLMPNGEINFEFVAENEDDEVGARQATDMVSKVVNQMNDPHFILERWVMDANMHKNGMMMIKPVREQIVRYIETQGTADQLKAFELQAAEAGLTALRQSRRRISVDMEKVMEEVTVLMGEQKKEFAQGVIGQFMETLKAAPGEESMDSEDVLMSENISEQQDILNESIKRNTIYSAKYKLTGYNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEVTELYPGIDLKVFEQFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRMVSVVTVWNKYDIDGDGELELIELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGEAAIFILDSKFDPAKDIYQMPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGIKLQMALSPNQIIQDNTVRNAAEGLKEALYLVWRTLIQYGDDYGVKKLAQAVHPDKKAEFLDFLAWDDMNFCERKQIHLELALGMMSDENALGRLQIIQKCQNDLYQVTQTMVAAGTLTPEVYKKVKKPFADTLYVLGVKDCNVYLPSDEEVSAMIKQAQEAQKGKTPSPEDQKDMSVAELNKIKAQQIAAQIEGADPDTQLNYMSIAMGKSQDYGH
Ga0209536_10000697513	F079653	AGGA	MFICAIEQNTMILCEKHAQAFEAAALVAGTPHTVYELDEEDALEAKCHACDLQDELTRPRIILPD
Ga0209536_10000697517	F012328	AGGA	MKKNLTPPSTAKVDNPWDEAPTQEPTAEDIRAVAEQIAATAPQAPRALNALDFDLEGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGQEIDPKYIGNENPYIDKTELVPVEELKDAPARDKTLPERNQVQNLFVSNQIPHTDFESRMQDKKVSVIFRKYNSGEISYEILGPVDQRPHGVKLDKYGRERPEIIKWVDPRSGEQTVVRNDGTLTPQGRKLRALMQTFKVNNSNYWDVWIDREFISLSDNIQQNVWDLNT
Ga0209536_1000069756	F001299	N/A	MNDINKPEYLDGKDPEKNLDYYRQDHGGMVTTHNGVADKLLQNNDLYRSMKGDWTRTEANRSGNIIVTTGREDGKFYIKREQQNTEAIKQAVKNYRHAAEAGIPDPLAPIGEDGKLTWKWMDLPHVIAIRISDQYFDGIPWNALKNDRTLKAQFYKVVETEYPEYVCYPGGKLPIPVQVPYPTKKGEKKYFRGH
Ga0209536_1000069759	F015856	AGG	MIDNNTIDFYNSRLTIDISQPSKLTTSQKDQVRHYGSLAEALLKNRDLAMFVHHFKFSLADELASIRSHGPEDNTRRIAISNELAGIDNFVNSLKRAVYYKNRLMQADMPGNAEAPGN