Scaffold Ga0209069_10035334

Overview

Basic Information

• Taxon OID: 3300027915
• Scaffold ID: Ga0209069_10035334
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2340
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.5935
  • Long. (^o): -78.5142

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013460	Metagenome / Metatranscriptome	271	Y
F093466	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209069_100353341	F093466	GAG	MHQSFAVYLRLTKPEFKKESLIVLRVIRHDAITLHSEVKEEDFERFMKEQLVPYFSKRYKGPTRASVADLKSQSLLKDTKGQRKYLWVTVWDGSPESVRGASFEHTRMIRFEETDTLLKKLESFGTR
Ga0209069_100353342	F013460	AGGAG	MNQVQEMNNGQAVHCLEVLHAVQTDSRTSAWYWGDVRGKAAVGAATGALWRKDLICSRVGASPFCLTPTGETFLKTHKKAWEAFLANTDRPTTVEHFARALTQMPEVHNAQDALA