Scaffold Ga0209698_10690697

Overview

Basic Information

• Taxon OID: 3300027911
• Scaffold ID: Ga0209698_10690697
• Source Dataset Name: Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 778
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006594	Metagenome / Metatranscriptome	369	Y
F062993	Metagenome / Metatranscriptome	130	Y
F104334	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209698_106906971	F104334	GAGG	MTRCNEPLLARILRRGEDVGLLVSVAALMLVEMGYVAWLERLPALPATAHPVGFIDLPPWFERPRFEVTLLLTV
Ga0209698_106906972	F006594	N/A	MGQDAEITAARVLHMVRSGTSPAVSPEAASIQSPSAARIVETFRARFAEACDAGVLKRLSNAVREPANPFDVKAGRELRQEARILGTLIFTALGLAVHFNLHAIAR
Ga0209698_106906973	F062993	N/A	QSQLVGDGIRVTSKGQAPVKVLNAEVHANAVAPGGTTWGLVALEWPPLTNGPTVVKFAFPSDGAGDVSAVLVL