NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209698_10051906

Scaffold Ga0209698_10051906


Overview

Basic Information
Taxon OID3300027911 Open in IMG/M
Scaffold IDGa0209698_10051906 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3590
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Clearfield County
CoordinatesLat. (o)41.170727Long. (o)-78.4726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F016552Metagenome / Metatranscriptome246Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209698_100519063F000739N/AMNVTRIEIWLKGLFAAAISGAAGGVLTGFAAVGIDPQHFNLQAGMGATLRIATAAALINAVIGVAAYLQKSPLPTE
Ga0209698_100519064F070523AGGMLLFPDERVAIHAKLGSVLKGGDPAEILLVIILLLALCPPSRRKAQKKKKQPKQLA
Ga0209698_100519065F000696GAGGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDAVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVAQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDATLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARTGYTPF
Ga0209698_100519068F016552AGAAGGMIRSKRAMGFLWVALALLFHAWPMVPVAKGQGTRKDDIVFNSRGIPLAGATVRVCAMPASGQPCAPLALIYSDSALTQALANPTSTDGLGNYFFYAAPGKYEIEISGPQITTKQIPNVILPNDPASPNFSAVSAFSLTLSGNLTVSGNTTVVGNLASGTLNLANQSTPPGAASSGTVNLYTKTADKSLYYKN
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