Scaffold Ga0209698_10000593

Overview

Basic Information

• Taxon OID: 3300027911
• Scaffold ID: Ga0209698_10000593
• Source Dataset Name: Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41574
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (79.25%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F001533	Metagenome / Metatranscriptome	676	Y
F001851	Metagenome / Metatranscriptome	626	Y
F008095	Metagenome / Metatranscriptome	339	Y
F029870	Metagenome / Metatranscriptome	187	Y
F033311	Metagenome	177	Y
F047848	Metagenome / Metatranscriptome	149	Y
F097887	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209698_1000059311	F001851	AGAAGG	MSATNIFLGLLIALFTILLLRWLRKLKPEITGFQSQRMCPSCGLITSRLKARCLECGKPLSVVYSTSKK
Ga0209698_1000059312	F000042	AGGA	MKTIKFVVKVNRGGRAAEYVQRVDPTPIHLTTNPKLASLMGRLTAQDAVESLQNSHCNAELLSVPVA
Ga0209698_1000059314	F001533	AGG	MDHLGVLRDKIGRLRAEIADIQELNQQFRRDGGKGADVQVAHGQRNERLQAIQHELVKLADLSRRVVSTEQMKEKHRSRLHLFTQKRAS
Ga0209698_1000059315	F008095	GAG	MKRMESTSMDKSRDQDQAKGAVEQDQNNQGGNTSMNGQLGHRDEDVNLKGADSDLSG
Ga0209698_1000059319	F047848	AGGAGG	MEYVHVFVLRTLCFDEDGEIKTRNVAVAFDMFEAEDHRNKGVENGYDTFVVPGNWREEQ
Ga0209698_1000059335	F033311	GGAGG	MSIQKLVQHYLAQGKTVRAAGLMLNLIETEPTPENLELLGDIYLEQGLFDDAKELYLRVVTAGLKRSN
Ga0209698_1000059337	F097887	AGGAGG	VKTFDNSGKKIGRIDQSFSKDKSVTVHELRNITTITVRDRNTGRVTTETLIGQSPFGTSE
Ga0209698_100005934	F029870	AGAAGG	MQGHDLRSRVLAKLTNARCELEDALNLSIPAARYDPVIIPEPLCNKLLAMIVDLKCLLRQIEGLQ