Scaffold Ga0209698

Basic Information
Taxon OID	3300027911 Open in IMG/M
Scaffold ID	Ga0209698_10000533 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027911 Open in IMG/M

Scaffold ID

Ga0209698_10000533 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43349
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

43349

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Clearfield County
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Clearfield County

Coordinates

Lat. (^o)

41.170727

Long. (^o)

-78.4726

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015327	Metagenome / Metatranscriptome	255	Y
F015956	Metagenome / Metatranscriptome	250	Y
F019749	Metagenome	228	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209698_100005333	F015956	AGGAG	LSAFWCRIERIGMTVMPRQQNQRGVNLVDRVRHQTERCALEQARRVPWKCLAAAADEFTEWQVFTLWLRVVVETAKSIPAVVALELESRTPQLHGSIRADIEAAVTNGSGAGARIWQDVSQWAEANVFITAKRAGWLDAVRYFSSVSLRSMKAWSHWERIDQQWRVATPKQFPTYAEWQRDVTAVSQLSNPDDTAQHLLDSVRAIAEVVWTRLLCGFSDLIAFSLWMELVLDIEGPASGLASKELGERYVGFSLPGAAIGSKEAVRALNEWVLAHGLAIADQEKLLEALSFHVSHHPAYHAMRRYALQCHDVWPDAYSDHLPAFEEWREAADAYFEE
Ga0209698_1000053336	F015327	GGAGG	MEPNALVECAYELMHVLKEELAERRTVQPAFILLHDRDCELLTFAPRLFASAEGKAAVARTFRNRALQTGAHGALVGLDSNCFIPDLASMREANPRLLRAAAAAGLDALIRSGFGRKSEGISVTLQTPAFHLLVQQLYTRGDNNIVFGVSQTLDSREVPLEAAGIFSIYGGQRVTRG
Ga0209698_100005334	F019749	GGAGG	MLESTNASQIVREEGADDSTSNHTPKKRGNLAATLDQDLEPRLSPGQPGRRQGTSNYEWTPETDKLLTELCAKCGVAKAKRLVGRRIQEERPTAAAPRPDSVRKAVERRMAKLGIPPGQKRRKPDRIEAKPWTEFQTKTLLGALGADATIESIALRTDHSVKSVRAKIARLDYEVDEIHGSAVFTADTLAALLHVTPRQIRRWRERGWLETKDRRITGQCVRDFLRAHPDRIPFDGLPRPEQVCLIDLGFPSRDAAVFKKNVREILGDIGRQRKPRRPVRKDEATAMAVGRDEGDTDGDDDSTLALESSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209698_10000533

Overview

Ecosystem & Geography

Associated Families

Sequences