Scaffold Ga0209583_10014855

Overview

Basic Information

• Taxon OID: 3300027910
• Scaffold ID: Ga0209583_10014855
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2370
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.5935
  • Long. (^o): -78.5142

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017386	Metagenome / Metatranscriptome	241	Y
F089334	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209583_100148552	F089334	GGAG	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGVLKERNEKLEKCTTALIEGLHPTVTVPPDKTKW
Ga0209583_100148555	F017386	N/A	VIDIDGYGVDVDGSGSVSVSGSDELNYRGLAEITTKESFFTNTIARLSGATLKDGKLQFPFRIGGTIDSPVFSKGKGDKDVDAAQKHR